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- KAT provides a suite of tools that, through the use of k-mer counts, help the user address or identify issues such as determining sequencing completeness for assembly, assessing sequencing bias, identifying contaminants, validating genomic assemblies and filtering content.
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A big thanks to the author of jellyfish, Guillaume Marcais. Detecting GC bias 4. We owe a big acknowledgment to all TGAC staff that has been bored eternally with k-mers, you have all been incredible patient and supportive with us. KAT is geared primarily to work with high-coverage genomic reads from Illumina devices, although can work with any fasta or fastq sequence file. Created using Sphinx 1.
This documentation is hosted publicablly on read the docs: KAT provides a suite of tools that, through the use of k-mer counts, help the user address or identify issues such as determining sequencing completeness for assembly, assessing sequencing bias, identifying contaminants, validating genomic assemblies and filtering content.
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- WELCOME TO KAT’S DOCUMENTATION! — KAT DOCUMENTATION
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